When you upload papers to Catalyticâs platform, our proprietary, automated ingestion pipeline performs numerous functions designed to make your content more useful. We transform your papers so that they are easy to organize, search, annotate, share and compute on while maintaining the original article format you are familiar with. Of course, we also securely store your original PDFs so that they are downloadable at anytime. We also provide a citation management and export tool. Catalyticâs platform runs on Amazon Web Services so there is no software for you to download or maintain.
We did the heavy lifting for you by ingesting PubMed Centralâs Open Access repository of over 1.1 million full text articles and 15 million abstracts, processing the dataset through our NLP pipeline and indexing the results. You can semantically search this dataset, have relevant associated text returned and add any content you find relevant to your library or share the returned text results with a single click. We are in the process of adding drug labels, patents, FDA documents, clinical trials, grants and other information-rich content to our library so that you can rapidly perform powerful cross domain searches.
We are leveraging open access tools and datasets to bring common downstream bioinformatics, analytics and visualizations to Catalytic users. We understand that most researchers donât work from the command line and thus valuable analytic tools that could advance your work remain out of reach. We wrap these powerful tools in easy to execute interfaces that any user can launch, save and share. Saved workflows enable documented provenance and once created can be re-launched with a single click to run on updated datasets as frequently as you desire.
Our NLP pipeline processes and indexes all of your content so that you can quickly search and find the information you need. Whether searching biomedical domain terminology in your papers or common language in your chat streams, our NLP pipeline is designed to return relevant associated text matches that can be quickly analyzed for relevance. We share your frustration with search engines that return endless pages of search results that contain keywords somewhere in the text, but maybe not even in the same section. Obtaining, storing and reading all those documents to determine relevancy is extremely inefficient and doesnât fit the workflow of todayâs researchers. We built a better solution.
We transform your static PDFs into a more useable format so you or your collaborative groups can interact with content more effectively. We built a light annotation tool designed for working researchers that enables rapid highlighting, tagging of biomedical concepts and text annotation. In addition, our inline drawing tool makes marking up images and tables simple and straightforward. All annotations are accessible from within the article or directly from your library and can be searched, shared or exported with a single click. Finally, we know that annotating articles is often tedious work for busy researchers so we built a solution that gives you the option to automatically extract key biomedical concepts from your papers and make them available to your downstream workflows.
Communicating and sharing your work product with collaborators or colleagues should not require interrupting workflows to open an email application, third party messaging application or sending invites to folders residing in popular online storage solutions. Catalyticâs messaging feature is integrated into your workspace and instantly available at the time and place you are doing work. Easily create groups, subgroups and individual contacts organized according to your preferences. You can instantly share virtually anything you are working on in a secure, private and searchable interface. Finding that conversation and associated files that you know you had with a colleague, but canât locate in your inbox is easily accomplished right from your workspace. By incorporating our NLP pipeline into Catalyticâs messaging feature you can mine all of your streams for biomedical concepts and associations making it even easier to find the exact information you are looking for.